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dekhn · 2016-08-02 · Original thread
my introduction to DNA sequence analysis was "the linguistics of DNA" by David Searlers: https://www.jstor.org/stable/29774782?seq=1#page_scan_tab_co...

it applies the chomsky hierarchy to sequence analysis, there is in fact a ton of interesting literature around graphical models like HMMs, see https://www.amazon.com/Biological-Sequence-Analysis-Probabil... for more details.

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