--Computer Organization--:
Computer Systems: A Programmer's Perspective http://www.amazon.com/Computer-Systems-Programmers-Randal-Br...
I liked this much better than Computer Organization and Design by Patterson and Hennessy which everyone has encountered at some point. The developer-centric view was very cool.
--Computer Security--:
Kernel Exploitation: Attacking the Core http://www.amazon.com/Guide-Kernel-Exploitation-Attacking-Co...
Most 'hacking' books are goofy. This one is very good and doubles nicely as a hackers operating systems text.
Web Application Hackers Handbook http://www.amazon.com/Web-Application-Hackers-Handbook-Disco...
Very nice overview for web concerns.
--Operating Systems-:
Operating System Design and Implementation http://www.amazon.com/Operating-Systems-Design-Implementatio...
I don't agree with Tanenbaum's views on micro vs. monolithic kernels but this book is a great mix of theory and implementation.
Linux Kernel Devleopment http://www.amazon.com/Linux-Kernel-Development-Robert-Love/d...
I used this to get a feel for the monolithic implementations of topics covered by Tanenbaum.
--Networking--:
TCP/IP Illustrated Series. More than you would ever want to know.
[1] http://www.amazon.com/Computer-Systems-Programmers-Randal-Br...
[2] http://www.amazon.com/Design-Operating-System-Prentice-Softw...
A Pattern Language, Alexander and Ishikawa and Silverstein http://amzn.to/2s9aSSc
Advanced Programming in the Unix Environment , Stevens http://amzn.to/2qPOMjN
Algorithmics: the Spirit of Computing, Harel http://amzn.to/2rW5FNS
Applied Crytography, Wiley http://amzn.to/2rsULxS
Clean Code, Martin http://amzn.to/2sIOWtQ
Clean Coder, Martin http://amzn.to/2rWgbEP
Code Complete, McConnel http://amzn.to/2qSUIwE
Code: The Hidden Language of Computer Hardware and Software, Petzold http://amzn.to/2rWfR9d
Coders at Work, Seibel http://amzn.to/2qPCasZ
Compilers: Principles, Techniques, & Tools, Aho http://amzn.to/2rCSUVA
Computer Systems: A Programmer's Perspective, O'Hallaron and Bryant http://amzn.to/2qPY5jH
Data Flow Analysis: Theory and Practice, Khedker http://amzn.to/2qTnSvr
Dependency Injection in .NET, Seemann http://amzn.to/2rCz0tV
Domain Driven Design, Evans http://amzn.to/2sIGM4N
Fundamentals of Wireless Communication, Tse and Viswanath http://amzn.to/2rCTmTM
Genetic Programming: An Intrduction, Banzhaf http://amzn.to/2s9sdut
Head First Design Patterns, O'Reilly http://amzn.to/2rCISUB
Implementing Domain-Driven Design, Vernon http://amzn.to/2qQ2G5u
Intrduction to Algorithms, CLRS http://amzn.to/2qXmSBU
Introduction to General Systems Thinking, Weinberg http://amzn.to/2qTuGJw
Joy of Clojure, Fogus and Houser http://amzn.to/2qPL4qr
Let over Lambda, Hoyte http://amzn.to/2rWljcp
Operating Systems: Design and Implementation, Tanenbaum http://amzn.to/2rKudsw
Parsing Techniques, Grune and Jacobs http://amzn.to/2rKNXfn
Peopleware: Productive Projects and Teams, DeMarco and Lister http://amzn.to/2qTu86F
Programming Pearls, Bentley http://amzn.to/2sIRPe9
Software Process Design: Out of the Tar Pit, McGraw-Hill http://amzn.to/2rVX0v0
Software Runaways, Glass http://amzn.to/2qT2mHn
Sorting and Searching, Knuth http://amzn.to/2qQ4NWQ
Structure and Interpretation of Computer Programs, Abelson and Sussman http://amzn.to/2qTflsk
The Art of Unit Testing, Manning http://amzn.to/2rsERDu
The Art of Unix Programming, ESR http://amzn.to/2sIAXUZ
The Design of Design: Essays from a Computer Scientist, Brooks http://amzn.to/2rsPjev
The Effective Engineer, Lau http://amzn.to/2s9fY0X
The Elements of Style, Strunk and White http://amzn.to/2svB3Qz
The Healthy Programmer, Kutner http://amzn.to/2qQ2MtQ
The Linux Programming Interface, Kerrisk http://amzn.to/2rsF8Xi
The Mythical Man-Month, Brooks http://amzn.to/2rt0dAR
The Practice of Programming, Kernighan and Pike http://amzn.to/2qTje0C
The Pragmatic Programmer, Hunt and Thomas http://amzn.to/2s9dlvS
The Psychology of Computer Programming, Weinberg http://amzn.to/2rsPypy
Transaction Processing: Concepts and Techniques, Gray and Reuter http://amzn.to/
Types and Programming Languages, Pierce http://amzn.to/2qT2d6G
Understanding MySQL Internals, Pachev http://amzn.to/2svXuFo
Working Effectively with Legacy Code, Feathers http://amzn.to/2sIr09R
Zen of graphics programming, Abrash http://amzn.to/2rKIW6Q