Letters -> Journalism -> Fiction
Largely due to his inability to focus on long works due to his (hilariously) reckless lifestyle. He was brilliant in small short pieces. I learned this having read nearly all of his work over the last 5 years. I recommend his collection of letters, published across a 3 book series, which he preserved over the years from being teenager in the 1950s to becoming a famous journalist in the late 60s.
http://www.amazon.com/The-Proud-Highway-Desperate-Gentleman/...
For example one of his letters that went viral recently, written while he was 20:
http://www.brainpickings.org/index.php/2013/11/04/hunter-s-t...
Both the letters and articles were released in 3 book series each. These are my favourite books from each series:
(letters) The Proud Highway: Saga of a Desperate Southern Gentleman, 1955-1967 (The Fear and Loathing Letters, Vol. 1
https://www.amazon.com/Proud-Highway-Desperate-Gentleman-195...
(articles) The Great Shark Hunt: Strange Tales from a Strange Time
https://www.amazon.com/Great-Shark-Hunt-Strange-Tales/dp/074...